Ops, I think is a little to late but, the solution:
First download the xampp-linux-devel (you can find here ==> http://www.apachefriends.org/en/xampp-linux.html), then extract the archive to the same directory that you have extracted you xammp (usually /opt/lammp/). You can to that with this command:
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$ sudo tar xzf xampp-linux-1.6.6.tar.gz -C /opt
Finally repeat the xdebug compile process. If you get some warnings with autoconfig just run this command in terminal:
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$ sudo apt-get install autoconf
Try to compile the xdebug again. In my Ubuntu 12.10 just worked and now I'm using xdebug + xampp normally. Sorry for my poor English, I'm still too bad in this language but I'll improve my skills.
+info: http://theindexer.wordpress.com/2008/06/11/installing-xdebug-on-xampp-for-linux/